Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Macromolecule Metabolic Process (GO:0043170) Genes Targeted by hsa-mir-590-3p in HSCC Head-Neck Chung Cluster 6 Table contains all genes in the HSCC Head-Neck Chung cluster number 6. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-590-3p GO:0043170 51074 APIP APAF1 interacting protein [Source:HGNC Symbol;Acc:17581] T 23469 PHF3 PHD finger protein 3 [Source:HGNC Symbol;Acc:8921] T Yes 23788 MTCH2 mitochondrial carrier homolog 2 (C. elegans) [Source:HGNC Symbol;Acc:17587] T 64149 C17orf75 chromosome 17 open reading frame 75 [Source:HGNC Symbol;Acc:30173] zzz999 50507 NOX4 NADPH oxidase 4 [Source:HGNC Symbol;Acc:7891] T 7541 ZFP161 zinc finger protein 161 homolog (mouse) [Source:HGNC Symbol;Acc:12860] T Yes 4891 SLC11A2 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 [Source:HGNC Symbol;Acc:10908] zzz999 1027 CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1) [Source:HGNC Symbol;Acc:1785] P T Yes 5867 RAB4A RAB4A, member RAS oncogene family [Source:HGNC Symbol;Acc:9781] P T 3033 HADH hydroxyacyl-CoA dehydrogenase [Source:HGNC Symbol;Acc:4799] T 10735 STAG2 stromal antigen 2 [Source:HGNC Symbol;Acc:11355] P T Yes 9847 KIAA0528 KIAA0528 [Source:HGNC Symbol;Acc:29062] T 90338 ZNF160 zinc finger protein 160 [Source:HGNC Symbol;Acc:12948] T Yes 5928 RBBP4 retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887] T Yes 4863 NPAT nuclear protein, ataxia-telangiectasia locus [Source:HGNC Symbol;Acc:7896] P T Yes 23131 GPATCH8 G patch domain containing 8 [Source:HGNC Symbol;Acc:29066] zzz999 427 ASAH1 N-acylsphingosine amidohydrolase (acid ceramidase) 1 [Source:HGNC Symbol;Acc:735] T 23473 CAPN7 calpain 7 [Source:HGNC Symbol;Acc:1484] T Yes 5504 PPP1R2 protein phosphatase 1, regulatory (inhibitor) subunit 2 [Source:HGNC Symbol;Acc:9288] P T Yes 51455 REV1 REV1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:14060] T Yes 5047 PAEP progestagen-associated endometrial protein [Source:HGNC Symbol;Acc:8573] zzz999 7738 ZNF184 zinc finger protein 184 [Source:HGNC Symbol;Acc:12975] zzz999 Yes 4841 NONO non-POU domain containing, octamer-binding [Source:HGNC Symbol;Acc:7871] zzz999 Yes 378 ARF4 ADP-ribosylation factor 4 [Source:HGNC Symbol;Acc:655] P T 9295 SRSF11 serine/arginine-rich splicing factor 11 [Source:HGNC Symbol;Acc:10782] zzz999 Yes 10269 ZMPSTE24 zinc metallopeptidase (STE24 homolog, S. cerevisiae) [Source:HGNC Symbol;Acc:12877] P T Yes 5501 PPP1CC protein phosphatase 1, catalytic subunit, gamma isozyme [Source:HGNC Symbol;Acc:9283] zzz999 Yes 10327 AKR1A1 aldo-keto reductase family 1, member A1 (aldehyde reductase) [Source:HGNC Symbol;Acc:380] zzz999 27035 NOX1 NADPH oxidase 1 [Source:HGNC Symbol;Acc:7889] T Yes 10284 SAP18 Sin3A-associated protein, 18kDa [Source:HGNC Symbol;Acc:10530] T Yes 23014 FBXO21 F-box protein 21 [Source:HGNC Symbol;Acc:13592] T Yes 7247 TSN translin [Source:HGNC Symbol;Acc:12379] T Yes 245711 SPDYA speedy homolog A (Xenopus laevis) [Source:HGNC Symbol;Acc:30613] zzz999 Yes 25793 FBXO7 F-box protein 7 [Source:HGNC Symbol;Acc:13586] zzz999 Yes 6894 TARBP1 TAR (HIV-1) RNA binding protein 1 [Source:HGNC Symbol;Acc:11568] zzz999 Yes 5718 PSMD12 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 [Source:HGNC Symbol;Acc:9557] T Yes 79084 WDR77 WD repeat domain 77 [Source:HGNC Symbol;Acc:29652] zzz999 Yes 22928 zzz999 zzz999 T 120 ADD3 adducin 3 (gamma) [Source:HGNC Symbol;Acc:245] P T 10523 CHERP calcium homeostasis endoplasmic reticulum protein [Source:HGNC Symbol;Acc:16930] zzz999 Yes 23522 MYST4 MYST histone acetyltransferase (monocytic leukemia) 4 [Source:HGNC Symbol;Acc:17582] P T Yes 57642 COL20A1 collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:14670] zzz999 5094 PCBP2 poly(rC) binding protein 2 [Source:HGNC Symbol;Acc:8648] T Yes 23479 ISCU iron-sulfur cluster scaffold homolog (E. coli) [Source:HGNC Symbol;Acc:29882] zzz999 1716 DGUOK deoxyguanosine kinase [Source:HGNC Symbol;Acc:2858] zzz999 Yes 81603 TRIM8 tripartite motif containing 8 [Source:HGNC Symbol;Acc:15579] zzz999 6612 SUMO3 SMT3 suppressor of mif two 3 homolog 3 (S. cerevisiae) [Source:HGNC Symbol;Acc:11124] T Yes 5911 RAP2A RAP2A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9861] P T Yes 7155 TOP2B topoisomerase (DNA) II beta 180kDa [Source:HGNC Symbol;Acc:11990] zzz999 Yes 63892 THADA thyroid adenoma associated [Source:HGNC Symbol;Acc:19217] zzz999 1994 ELAVL1 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) [Source:HGNC Symbol;Acc:3312] zzz999 Yes 11108 PRDM4 PR domain containing 4 [Source:HGNC Symbol;Acc:9348] T Yes 7743 ZNF189 zinc finger protein 189 [Source:HGNC Symbol;Acc:12980] zzz999 Yes 8125 ANP32A acidic (leucine-rich) nuclear phosphoprotein 32 family, member A [Source:HGNC Symbol;Acc:13233] zzz999 Yes 6432 SRSF7 serine/arginine-rich splicing factor 7 [Source:HGNC Symbol;Acc:10789] zzz999 Yes 7507 XPA xeroderma pigmentosum, complementation group A [Source:HGNC Symbol;Acc:12814] zzz999 Yes 7025 NR2F1 nuclear receptor subfamily 2, group F, member 1 [Source:HGNC Symbol;Acc:7975] zzz999 Yes 5326 PLAGL2 pleiomorphic adenoma gene-like 2 [Source:HGNC Symbol;Acc:9047] T Yes 5194 PEX13 peroxisomal biogenesis factor 13 [Source:HGNC Symbol;Acc:8855] P T 9877 ZC3H11A zinc finger CCCH-type containing 11A [Source:HGNC Symbol;Acc:29093] zzz999 10299 MARCH6 membrane-associated ring finger (C3HC4) 6 [Source:HGNC Symbol;Acc:30550] zzz999 Yes 2778 GNAS GNAS complex locus [Source:HGNC Symbol;Acc:4392] T 58497 PRUNE prune homolog (Drosophila) [Source:HGNC Symbol;Acc:13420] zzz999 26470 SEZ6L2 seizure related 6 homolog (mouse)-like 2 [Source:HGNC Symbol;Acc:30844] zzz999 93594 WDR67 WD repeat domain 67 [Source:HGNC Symbol;Acc:30888] T 8450 CUL4B cullin 4B [Source:HGNC Symbol;Acc:2555] T Yes 8773 SNAP23 synaptosomal-associated protein, 23kDa [Source:HGNC Symbol;Acc:11131] T 57448 BIRC6 baculoviral IAP repeat containing 6 [Source:HGNC Symbol;Acc:13516] zzz999 Yes 8543 LMO4 LIM domain only 4 [Source:HGNC Symbol;Acc:6644] zzz999 Yes 10935 PRDX3 peroxiredoxin 3 [Source:HGNC Symbol;Acc:9354] zzz999 Yes 9889 ZBED4 zinc finger, BED-type containing 4 [Source:HGNC Symbol;Acc:20721] T 5870 RAB6A RAB6A, member RAS oncogene family [Source:HGNC Symbol;Acc:9786] T Yes 8554 PIAS1 protein inhibitor of activated STAT, 1 [Source:HGNC Symbol;Acc:2752] T Yes 81539 SLC38A1 solute carrier family 38, member 1 [Source:HGNC Symbol;Acc:13447] zzz999 196 AHR aryl hydrocarbon receptor [Source:HGNC Symbol;Acc:348] T Yes 4174 MCM5 minichromosome maintenance complex component 5 [Source:HGNC Symbol;Acc:6948] zzz999 Yes 58517 RBM25 RNA binding motif protein 25 [Source:HGNC Symbol;Acc:23244] P T Yes 694 BTG1 B-cell translocation gene 1, anti-proliferative [Source:HGNC Symbol;Acc:1130] zzz999 Yes 483 ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide [Source:HGNC Symbol;Acc:806] T 654 BMP6 bone morphogenetic protein 6 [Source:HGNC Symbol;Acc:1073] T Yes 6874 TAF4 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa [Source:HGNC Symbol;Acc:11537] T Yes 1633 DCK deoxycytidine kinase [Source:HGNC Symbol;Acc:2704] P T 5257 PHKB phosphorylase kinase, beta [Source:HGNC Symbol;Acc:8927] T Yes 1854 DUT deoxyuridine triphosphatase [Source:HGNC Symbol;Acc:3078] zzz999 Yes 22796 COG2 component of oligomeric golgi complex 2 [Source:HGNC Symbol;Acc:6546] zzz999 Yes 6102 RP2 retinitis pigmentosa 2 (X-linked recessive) [Source:HGNC Symbol;Acc:10274] P T Yes 7596 ZNF45 zinc finger protein 45 [Source:HGNC Symbol;Acc:13111] T Yes 9735 KNTC1 kinetochore associated 1 [Source:HGNC Symbol;Acc:17255] zzz999 10240 MRPS31 mitochondrial ribosomal protein S31 [Source:HGNC Symbol;Acc:16632] zzz999 54386 TERF2IP telomeric repeat binding factor 2, interacting protein [Source:HGNC Symbol;Acc:19246] T Yes

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